Ppha_2887 protein (Pelodictyon phaeoclathratiforme)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ppha_2887

KEGG: cph:Cpha266_2711 hypothetical protein. (81 aa)

Predicted Functional Partners:

Ppha_2886

0.654

atpB

0.640

Ppha_2888

0.453

atpE

0.420

Your Current Organism:

Pelodictyon phaeoclathratiforme

NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ppha_2886	Ppha_2887	Ppha_2886	Ppha_2887	KEGG: plt:Plut_2099 hypothetical protein.	KEGG: cph:Cpha266_2711 hypothetical protein.	0.654
Ppha_2886	atpB	Ppha_2886	Ppha_2885	KEGG: plt:Plut_2099 hypothetical protein.	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.	0.781
Ppha_2886	atpE	Ppha_2886	Ppha_2884	KEGG: plt:Plut_2099 hypothetical protein.	ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.506
Ppha_2887	Ppha_2886	Ppha_2887	Ppha_2886	KEGG: cph:Cpha266_2711 hypothetical protein.	KEGG: plt:Plut_2099 hypothetical protein.	0.654
Ppha_2887	Ppha_2888	Ppha_2887	Ppha_2888	KEGG: cph:Cpha266_2711 hypothetical protein.	PFAM: protein of unknown function DUF152; KEGG: cch:Cag_0061 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.	0.453
Ppha_2887	atpB	Ppha_2887	Ppha_2885	KEGG: cph:Cpha266_2711 hypothetical protein.	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.	0.640
Ppha_2887	atpE	Ppha_2887	Ppha_2884	KEGG: cph:Cpha266_2711 hypothetical protein.	ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.420
Ppha_2888	Ppha_2887	Ppha_2888	Ppha_2887	PFAM: protein of unknown function DUF152; KEGG: cch:Cag_0061 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.	KEGG: cph:Cpha266_2711 hypothetical protein.	0.453
Ppha_2888	atpB	Ppha_2888	Ppha_2885	PFAM: protein of unknown function DUF152; KEGG: cch:Cag_0061 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.	0.469
atpB	Ppha_2886	Ppha_2885	Ppha_2886	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.	KEGG: plt:Plut_2099 hypothetical protein.	0.781
atpB	Ppha_2887	Ppha_2885	Ppha_2887	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.	KEGG: cph:Cpha266_2711 hypothetical protein.	0.640
atpB	Ppha_2888	Ppha_2885	Ppha_2888	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.	PFAM: protein of unknown function DUF152; KEGG: cch:Cag_0061 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.	0.469
atpB	atpE	Ppha_2885	Ppha_2884	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.	ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.999
atpE	Ppha_2886	Ppha_2884	Ppha_2886	ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	KEGG: plt:Plut_2099 hypothetical protein.	0.506
atpE	Ppha_2887	Ppha_2884	Ppha_2887	ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	KEGG: cph:Cpha266_2711 hypothetical protein.	0.420
atpE	atpB	Ppha_2884	Ppha_2885	ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.	0.999

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About