Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_2903KEGG: pvi:Cvib_1763 hypothetical protein. (176 aa)    
Predicted Functional Partners:
Ppha_2904
PFAM: Chorismate mutase; KEGG: cch:Cag_0046 chorismate mutase, putative.
       0.589
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
       0.577
Ppha_2892
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
 
     0.555
cysS
KEGG: pvi:Cvib_0277 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.509
Ppha_1876
PFAM: ferrochelatase; KEGG: cph:Cpha266_0958 ferrochelatase; Belongs to the ferrochelatase family.
  
     0.499
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
  
     0.495
Ppha_1504
KEGG: cph:Cpha266_1536 hypothetical protein.
  
     0.488
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.481
mraZ
PFAM: protein of unknown function UPF0040; KEGG: pvi:Cvib_1762 hypothetical protein; Belongs to the MraZ family.
       0.481
Ppha_2900
KEGG: cph:Cpha266_2728 hypothetical protein.
       0.474
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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