STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2907PFAM: Rhomboid family protein; KEGG: cph:Cpha266_2735 rhomboid family protein. (273 aa)    
Predicted Functional Partners:
Ppha_2908
PFAM: protein of unknown function DUF1232; KEGG: plt:Plut_2125 hypothetical protein.
       0.790
Ppha_1164
PFAM: band 7 protein; KEGG: cch:Cag_1233 band 7 protein.
   
 0.767
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.719
pgk
PFAM: phosphoglycerate kinase; KEGG: cch:Cag_0044 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.612
Ppha_1357
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cch:Cag_0899 5-formyltetrahydrofolate cyclo-ligase, putative; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.586
Ppha_0795
Hypothetical protein; KEGG: gbe:GbCGDNIH1_1764 general secretion pathway protein N.
   
   0.561
Ppha_2841
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: plt:Plut_2072 N-acetylmuramoyl-L-alanine amidase.
   
   0.561
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
  
    0.522
Ppha_1985
KEGG: plt:Plut_1351 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.441
Ppha_2904
PFAM: Chorismate mutase; KEGG: cch:Cag_0046 chorismate mutase, putative.
       0.407
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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