STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_2908PFAM: protein of unknown function DUF1232; KEGG: plt:Plut_2125 hypothetical protein. (152 aa)    
Predicted Functional Partners:
Ppha_2907
PFAM: Rhomboid family protein; KEGG: cph:Cpha266_2735 rhomboid family protein.
       0.790
pgk
PFAM: phosphoglycerate kinase; KEGG: cch:Cag_0044 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
       0.614
rpsU
PFAM: ribosomal protein S21; KEGG: pvi:Cvib_0348 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.550
Ppha_2904
PFAM: Chorismate mutase; KEGG: cch:Cag_0046 chorismate mutase, putative.
 
     0.495
Ppha_2781
KEGG: cph:Cpha266_2535 phospholipase/carboxylesterase.
  
     0.467
Ppha_1892
PFAM: protein of unknown function DUF814; KEGG: cph:Cpha266_0942 protein of unknown function DUF814.
  
     0.464
Ppha_2057
PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0717 NUDIX hydrolase.
  
     0.450
Ppha_0148
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_1456 TPR repeat-containing protein.
  
     0.421
Ppha_1664
KEGG: cph:Cpha266_1274 hypothetical protein.
  
     0.415
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
       0.410
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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