Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102790457Developmentally regulated GTP binding protein 1. (366 aa)    
Predicted Functional Partners:
LOC102800234
Zinc finger CCCH-type containing 15.
   
 0.999
LOC102786622
RWD domain containing 1.
   
 0.994
LOC102797559
Developmentally regulated GTP binding protein 2.
   
   0.945
RELL1
RELT like 1.
   
 0.939
LOC102784427
RWD domain containing 4.
   
 0.939
LOC102782878
N-terminal Xaa-Pro-Lys N-methyltransferase 1.
   
   0.895
LOC102795110
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
   0.885
LOC102782025
Ribosomal protein L8.
   
 
 0.882
LOC102776933
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
   0.878
RPL7A
Ribosomal protein L7a.
   
   0.865
Your Current Organism:
Neolamprologus brichardi
NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid
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