STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_0184PFAM: regulatory protein, AsnC/Lrp family; KEGG: shn:Shewana3_3959 transcriptional regulator, AsnC family. (143 aa)    
Predicted Functional Partners:
Sbal_4022
PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4337 transcriptional regulator, AsnC family.
  
     0.772
Sbal_0732
PFAM: regulatory protein, AsnC/Lrp family; KEGG: shn:Shewana3_0798 transcriptional regulator, AsnC family.
  
     0.762
Sbal_0185
PFAM: amino acid permease-associated region; KEGG: shm:Shewmr7_3833 amino acid permease-associated region.
 
     0.592
Sbal_1178
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: shm:Shewmr7_2954 glutamate synthase (ferredoxin).
     
 0.458
Sbal_3458
L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.450
Sbal_0190
KEGG: shm:Shewmr7_3828 hypothetical protein.
   
    0.402
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.