STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_0219PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO4520 coproporphyrinogen III oxidase. (445 aa)    
Predicted Functional Partners:
Sbal_1490
PFAM: OmpW family protein; KEGG: shm:Shewmr7_2668 OmpW family protein.
  
  
 0.854
Sbal_2201
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: shn:Shewana3_2107 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.669
Sbal_1046
Phosphoketolase; PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: son:SO3542 putative phosphoketolase.
   
    0.607
Sbal_2202
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: shn:Shewana3_2108 cytochrome c oxidase, cbb3-type, subunit II.
  
  
 0.589
Sbal_0957
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shn:Shewana3_3228 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
  
 0.547
Sbal_4338
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_3916 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
  
 0.547
Sbal_2209
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: shm:Shewmr7_1961 transcriptional regulator, Crp/Fnr family.
  
  
 0.538
Sbal_2675
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.529
Sbal_1590
KEGG: shn:Shewana3_2675 decaheme cytochrome c.
  
     0.512
Sbal_2797
KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative.
  
     0.495
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.