STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_0673KEGG: shn:Shewana3_0747 diguanylate cyclase. (311 aa)    
Predicted Functional Partners:
Sbal_1370
KEGG: she:Shewmr4_2717 hypothetical protein.
   
    0.843
Sbal_0671
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shn:Shewana3_0747 diguanylate cyclase.
      0.771
Sbal_0672
PFAM: Integrase, catalytic region; KEGG: sdn:Sden_2262 integrase, catalytic region.
       0.596
Sbal_3858
KEGG: pat:Patl_1924 hypothetical protein.
  
 
 0.586
Sbal_3505
Multi-sensor hybrid histidine kinase; KEGG: shn:Shewana3_3419 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.568
prfB
Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.563
Sbal_0674
PFAM: phosphoesterase, PA-phosphatase related; KEGG: she:Shewmr4_3190 phosphoesterase, PA-phosphatase related.
       0.543
Sbal_3148
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: shn:Shewana3_1109 response regulator receiver protein.
  
  
 0.534
Sbal_0675
KEGG: son:SO3856 hypothetical protein.
       0.465
Sbal_3215
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: she:Shewmr4_1049 multi-sensor hybrid histidine kinase.
  
  
 0.465
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.