Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_1237KEGG: shm:Shewmr7_1219 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Sbal_1235
KEGG: shn:Shewana3_1147 conserved hypothetical protein.
  
    0.963
Sbal_0952
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shn:Shewana3_3235 TonB-dependent heme/hemoglobin receptor family protein.
  
    0.847
Sbal_1236
PFAM: PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_1218 PepSY-associated TM helix domain protein.
  
    0.845
Sbal_0954
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: son:SO3667 hypothetical protein.
   
    0.780
Sbal_1234
PFAM: OsmC family protein; KEGG: shm:Shewmr7_1216 OsmC family protein.
       0.520
Sbal_1397
TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shn:Shewana3_2862 TonB-dependent heme/hemoglobin receptor family protein.
  
    0.487
Sbal_1729
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shn:Shewana3_2551 TonB-dependent siderophore receptor.
  
    0.487
Sbal_1802
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_2310 TonB-dependent receptor.
  
    0.487
Sbal_3287
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1156 TonB-dependent receptor.
  
    0.487
Sbal_0298
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0286 TonB-dependent receptor.
  
    0.460
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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