STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_1424KEGG: shn:Shewana3_2841 omega-3 polyunsaturated fatty acid synthase PfaB. (725 aa)    
Predicted Functional Partners:
Sbal_1423
PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: she:Shewmr4_2668 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.982
Sbal_1427
PFAM: 4'-phosphopantetheinyl transferase; KEGG: shm:Shewmr7_2731 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
 
 
 0.976
Sbal_1422
KEGG: shm:Shewmr7_2736 2-nitropropane dioxygenase, NPD.
 
  
 0.962
Sbal_1425
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: she:Shewmr4_2666 beta-ketoacyl synthase.
 
  
 0.917
Sbal_1552
PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_2613 AMP-dependent synthetase and ligase.
 
 0.762
Sbal_1550
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; KEGG: she:Shewmr4_2548 3-oxoacyl-(acyl-carrier-protein (ACP)) synthase III C terminal domain protein.
 
  
 0.758
Sbal_3195
PFAM: thioesterase superfamily protein; KEGG: shn:Shewana3_1071 thioesterase superfamily protein.
  
 
 0.732
Sbal_1426
KEGG: shm:Shewmr7_2732 transcriptional regulator, putative.
 
   
 0.711
Sbal_1718
[Acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: shm:Shewmr7_2467 malonyl CoA-acyl carrier protein transacylase.
  
 
 0.685
Sbal_1551
PFAM: alpha/beta hydrolase fold; KEGG: shn:Shewana3_2714 alpha/beta hydrolase fold.
  
  
 0.669
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.