STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_2099PFAM: proteinase inhibitor I11, ecotin; KEGG: shn:Shewana3_2000 proteinase inhibitor I11, ecotin. (183 aa)    
Predicted Functional Partners:
Sbal_2631
KEGG: shn:Shewana3_1584 conserved hypothetical protein; Belongs to the UPF0319 family.
   
    0.843
Sbal_0244
KEGG: shn:Shewana3_0246 conserved hypothetical protein.
  
     0.519
Sbal_3799
PFAM: protein of unknown function DUF541; KEGG: shn:Shewana3_3626 protein of unknown function DUF541.
   
    0.511
Sbal_1646
Diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1830 GGDEF domain protein.
  
     0.494
Sbal_1397
TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shn:Shewana3_2862 TonB-dependent heme/hemoglobin receptor family protein.
  
     0.485
Sbal_3907
KEGG: son:SO0430 hypothetical protein.
  
     0.485
Sbal_3326
KEGG: son:SO3679 hypothetical protein.
  
     0.481
Sbal_4239
PFAM: protein of unknown function DUF1090; KEGG: son:SO0119 hypothetical protein.
  
     0.465
Sbal_1805
PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: son:SO2712 hypothetical protein.
  
     0.413
Sbal_3384
PFAM: sodium/calcium exchanger membrane region; KEGG: shn:Shewana3_3290 sodium/calcium exchanger membrane region.
  
     0.413
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.