STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_2793Oxidoreductase domain protein; Glycosidase. (459 aa)    
Predicted Functional Partners:
Sbal_3728
Galactokinase; KEGG: son:SO0694 galactokinase; TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.886
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: shn:Shewana3_3296 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.870
Sbal_2890
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: she:Shewmr4_1318 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.859
Sbal_2373
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: shn:Shewana3_1908 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.815
Sbal_2966
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: son:SO3270 polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.768
Sbal_0067
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: saz:Sama_2261 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.750
Sbal_0357
KEGG: she:Shewmr4_3611 hypothetical protein.
 
  
 0.744
cobB
PFAM: Silent information regulator protein Sir2; KEGG: shn:Shewana3_1717 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
   
 
 0.718
Sbal_0982
PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein.
  
  
 0.704
Sbal_0624
KEGG: bam:Bamb_1127 nucleoside-diphosphate-sugar epimerase-like protein.
   
 
 0.686
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.