STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_3052PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO3382 oxidoreductase, short-chain dehydrogenase/reductase family. (266 aa)    
Predicted Functional Partners:
Sbal_3053
KEGG: shn:Shewana3_1167 transcriptional regulator-related protein.
 
  
 0.956
Sbal_3050
PFAM: protein of unknown function DUF1365; KEGG: son:SO3380 hypothetical protein.
 
  
 0.933
Sbal_3051
PFAM: amine oxidase; KEGG: shm:Shewmr7_1239 amine oxidase.
 
   
 0.922
Sbal_3046
KEGG: son:SO3376 hypothetical protein.
 
    0.911
Sbal_3049
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO3379 cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.889
Sbal_3055
PFAM: regulatory protein, MerR; KEGG: son:SO3385 transcriptional regulator, MerR family.
 
   
 0.794
Sbal_3054
Deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: shn:Shewana3_1166 DNA photolyase, FAD-binding.
 
    0.781
Sbal_3047
KEGG: son:SO3377 hypothetical protein.
 
     0.773
Sbal_3048
KEGG: son:SO3378 hypothetical protein.
 
   
 0.773
Sbal_3056
PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: shm:Shewmr7_1234 protein of unknown function DUF1722.
       0.610
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.