STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_3203PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase. (297 aa)    
Predicted Functional Partners:
Sbal_3201
KEGG: shm:Shewmr7_1134 sterol-binding domain protein.
 
  
 0.979
Sbal_3202
PFAM: peptidase U32; KEGG: she:Shewmr4_1061 peptidase U32.
 
 
 0.977
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
     
 0.872
Sbal_3198
PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family.
 
 
 0.842
Sbal_0734
PFAM: peptidase U32; KEGG: shm:Shewmr7_0828 peptidase U32.
 
 
 0.809
lon
Lon-A peptidase. Serine peptidase. MEROPS family S16; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
   
 
 0.667
Sbal_1680
PFAM: NnrS family protein; KEGG: shn:Shewana3_2587 NnrS family protein.
 
    0.652
Sbal_3409
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shm:Shewmr7_0899 uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
    0.532
Sbal_0793
Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: shn:Shewana3_0657 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ.
 
    0.511
udk
TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: shn:Shewana3_1762 uridine kinase.
  
    0.490
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.