STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_3377KEGG: shn:Shewana3_2250 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein. (435 aa)    
Predicted Functional Partners:
Sbal_2594
PFAM: response regulator receiver; CheW domain protein; KEGG: she:Shewmr4_2272 response regulator receiver modulated CheW protein.
 
 0.997
Sbal_2796
PFAM: response regulator receiver; CheW domain protein; KEGG: shn:Shewana3_1425 response regulator receiver modulated CheW protein.
 
 0.996
Sbal_2949
PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3252 chemotaxis protein CheV.
 
 0.996
Sbal_2906
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: she:Shewmr4_1302 CheA signal transduction histidine kinases.
 
 0.971
Sbal_2112
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; KEGG: shn:Shewana3_2218 CheA signal transduction histidine kinases.
 
 0.970
Sbal_3694
KEGG: shn:Shewana3_3543 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.966
Sbal_2901
PFAM: CheW domain protein; KEGG: shn:Shewana3_1367 CheW protein.
 
 0.964
Sbal_2113
PFAM: CheW domain protein; KEGG: shn:Shewana3_2217 CheW protein.
 
 0.951
Sbal_2948
PFAM: MCP methyltransferase, CheR-type; KEGG: shn:Shewana3_1320 MCP methyltransferase, CheR-type.
 
 0.944
Sbal_2115
MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
 0.934
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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