STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_3662PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3343 ABC transporter related. (279 aa)    
Predicted Functional Partners:
Sbal_3660
PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein.
 
 0.999
Sbal_3661
PFAM: protein of unknown function DUF140; KEGG: shn:Shewana3_0679 protein of unknown function DUF140.
 
 0.999
Sbal_2107
Anti-sigma-factor antagonist; KEGG: son:SO2118 SpoIIAA family protein.
   
   0.966
Sbal_3658
KEGG: shm:Shewmr7_3339 SpoIIAA family protein.
  
 0.965
Sbal_3659
PFAM: toluene tolerance family protein; KEGG: shm:Shewmr7_3340 toluene tolerance family protein.
 
 
 0.964
Sbal_1612
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.885
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.646
Sbal_3657
PFAM: BolA family protein; KEGG: shn:Shewana3_0683 BolA family protein; Belongs to the BolA/IbaG family.
     
 0.635
Sbal_1888
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: son:SO2098 hydrogenase large chain; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
    
   0.497
cysS
KEGG: shn:Shewana3_2664 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.466
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.