STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBI17_002458Uncharacterized protein. (75 aa)    
Predicted Functional Partners:
BBI17_000839
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.701
BBI17_007709
Sm domain-containing protein.
    
  0.691
BBI17_002695
Small nuclear ribonucleoprotein G.
    
  0.690
BBI17_008776
Uncharacterized protein.
    
 0.686
BBI17_002159
Uncharacterized protein.
    
 0.686
BBI17_005319
Small nuclear ribonucleoprotein Sm D2.
    
 0.680
BBI17_005318
Uncharacterized protein.
    
 0.680
BBI17_005653
Small nuclear ribonucleoprotein Sm D3.
    
 0.678
BBI17_006142
Sm domain-containing protein.
    
 0.678
BBI17_006171
Uncharacterized protein.
    
  0.672
Your Current Organism:
Phytophthora kernoviae
NCBI taxonomy Id: 325452
Other names: IMI:393170, P. kernoviae, Phytophthora kernoviae Brasier, Beales & S.A. Kirk, 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.