STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBI17_009089Choline dehydrogenase. (584 aa)    
Predicted Functional Partners:
BBI17_000041
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
  
 
 0.909
BBI17_004947
Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.886
BBI17_003408
Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.886
BBI17_006638
Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. Belongs to the phosphatidylserine decarboxylase family. PSD-B subfamily. Eukaryotic type I sub-subfamily.
     
 0.873
BBI17_004144
PNPLA domain-containing protein.
    
  0.835
BBI17_003172
PNPLA domain-containing protein.
    
  0.835
BBO99_00003827
PNPLA domain-containing protein.
    
  0.820
BBI17_004489
Uncharacterized protein.
    
 0.811
BBI17_005570
Uncharacterized protein.
    
 0.787
BBI17_003741
IFT81_CH domain-containing protein.
    
 0.776
Your Current Organism:
Phytophthora kernoviae
NCBI taxonomy Id: 325452
Other names: IMI:393170, P. kernoviae, Phytophthora kernoviae Brasier, Beales & S.A. Kirk, 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.