STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBI17_005416Uncharacterized protein. (384 aa)    
Predicted Functional Partners:
BBI17_003539
TAFII55_N domain-containing protein.
    
 
 0.539
BBI17_006334
Myb-like domain-containing protein.
    
 
 0.491
BBI17_000120
Histone H2A; Belongs to the histone H2A family.
    
 
 0.469
BBI17_009084
E2F_CC-MB domain-containing protein.
    
   0.450
BBI17_000848
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 
 0.442
BBI17_002559
Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. Belongs to the histone H4 family.
    
 
 0.442
BBI17_007168
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 
 0.442
BBO99_00002598
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 
 0.442
BBI17_001234
RuvB-like helicase; Belongs to the RuvB family.
    
 
 0.432
BBI17_002247
RuvB-like helicase; Belongs to the RuvB family.
    
 
 0.432
Your Current Organism:
Phytophthora kernoviae
NCBI taxonomy Id: 325452
Other names: IMI:393170, P. kernoviae, Phytophthora kernoviae Brasier, Beales & S.A. Kirk, 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.