STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBI17_006417Uncharacterized protein. (496 aa)    
Predicted Functional Partners:
BBI17_002817
PH domain-containing protein.
    
 0.651
BBI17_002037
Uncharacterized protein.
    
 0.651
BBI17_003679
Protein kinase domain-containing protein.
    
  0.595
BBI17_000394
Protein kinase domain-containing protein.
    
  0.595
BBI17_006092
Protein kinase domain-containing protein.
    
  0.595
BBI17_003619
AAA domain-containing protein.
    
 0.581
BBI17_001852
Protein kinase domain-containing protein.
    
 0.580
BBI17_004099
ANK_REP_REGION domain-containing protein.
    
 0.558
BBO99_00000627
ANK_REP_REGION domain-containing protein.
    
 0.558
BBO99_00004288
Uncharacterized protein.
    
 0.544
Your Current Organism:
Phytophthora kernoviae
NCBI taxonomy Id: 325452
Other names: IMI:393170, P. kernoviae, Phytophthora kernoviae Brasier, Beales & S.A. Kirk, 2005
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