STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000826645_02231Unannotated protein. (253 aa)    
Predicted Functional Partners:
GCA_000826645_02230
Unannotated protein.
       0.832
GCA_000826645_00456
Unannotated protein.
 
    
 0.730
GCA_000826645_02232
Unannotated protein.
       0.665
GCA_000826645_00644
Unannotated protein.
      0.656
GCA_000826645_00084
Unannotated protein.
   
    0.444
GCA_000826645_02087
Unannotated protein.
   
    0.444
GCA_000826645_00136
Unannotated protein.
  
     0.440
GCA_000826645_01189
Unannotated protein.
    
 0.429
GCA_000826645_00141
Unannotated protein.
  
  
 0.415
Your Current Organism:
Psychroserpens mesophilus
NCBI taxonomy Id: 325473
Other names: JCM 13413, KCCM 42261, P. mesophilus, Psychroserpens mesophilus Kwon et al. 2006, strain KOPRI 13649
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.