STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000826645_02811Unannotated protein. (643 aa)    
Predicted Functional Partners:
GCA_000826645_02812
Unannotated protein.
       0.547
GCA_000826645_01466
Unannotated protein.
  
     0.522
GCA_000826645_02064
Unannotated protein.
  
     0.521
GCA_000826645_03221
Unannotated protein.
  
     0.453
GCA_000826645_03041
Unannotated protein.
  
     0.425
GCA_000826645_00577
Unannotated protein.
  
     0.415
GCA_000826645_01835
Unannotated protein.
  
     0.411
Your Current Organism:
Psychroserpens mesophilus
NCBI taxonomy Id: 325473
Other names: JCM 13413, KCCM 42261, P. mesophilus, Psychroserpens mesophilus Kwon et al. 2006, strain KOPRI 13649
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.