Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
KGE53380.1Nucleoside-diphosphate sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)    
Predicted Functional Partners:
KGE51277.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.808
KGE53381.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.703
KGE53378.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.640
KGE53379.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.640
KGE53089.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.438
KGE51276.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.434
KGE52983.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.421
KGE51273.1
3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
     0.420
Your Current Organism:
Xanthomonas axonopodis
NCBI taxonomy Id: 325777
Other names: X. axonopodis pv. vasculorum, Xanthomonas axonopodis pv. vasculorum
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