STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGE53358.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (772 aa)    
Predicted Functional Partners:
KGE53359.1
Fe(II)-dependent oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
KGE53360.1
Sel1 repeat-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.660
KGE53749.1
Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.657
KGE50725.1
Iron-uptake factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.618
tolQ
Colicin transporter; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.606
KGE52269.1
Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.563
KGE51799.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.509
KGE53748.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.501
KGE53356.1
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.491
KGE52874.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
Your Current Organism:
Xanthomonas axonopodis
NCBI taxonomy Id: 325777
Other names: X. axonopodis pv. vasculorum, Xanthomonas axonopodis pv. vasculorum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.