Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KGE53359.1Fe(II)-dependent oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)    
Predicted Functional Partners:
KGE53358.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.991
KGE53360.1
Sel1 repeat-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.903
KGE50886.1
Integrase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.748
KGE51233.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.509
KGE51285.1
Ferric-rhodotorulic acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.486
KGE50725.1
Iron-uptake factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.468
KGE51985.1
Hydroxyproline-2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the proline racemase family.
     
  0.408
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
  0.408
Your Current Organism:
Xanthomonas axonopodis
NCBI taxonomy Id: 325777
Other names: X. axonopodis pv. vasculorum, Xanthomonas axonopodis pv. vasculorum
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