STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGE52856.1Cell shape determination protein CcmA; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)    
Predicted Functional Partners:
KGE52855.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.827
KGE52857.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
KGE52406.1
Flagellar biosynthesis protein FliS; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.495
KGE51103.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.443
KGE52850.1
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.428
KGE52851.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.428
KGE52852.1
ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.428
KGE52853.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.428
KGE52854.1
mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.428
KGE53413.1
Cell shape determination protein CcmA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.427
Your Current Organism:
Xanthomonas axonopodis
NCBI taxonomy Id: 325777
Other names: X. axonopodis pv. vasculorum, Xanthomonas axonopodis pv. vasculorum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.