STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0044KEGG: son:SO0033 LysM domain protein. (346 aa)    
Predicted Functional Partners:
Sama_3369
KEGG: son:SO0285 type IV pilus biogenesis protein PilQ.
 
 
 
 0.948
Sama_3370
KEGG: son:SO0284 type IV pilus biogenesis protein PilP.
 
 
   0.902
Sama_3371
KEGG: son:SO0283 type IV pilus biogenesis protein PilO.
 
 
   0.902
Sama_3372
KEGG: son:SO0282 type IV pilus biogenesis protein PilN.
  
 
   0.901
Sama_3373
KEGG: son:SO0281 type IV pilus biogenesis protein PilM.
  
 
   0.896
Sama_2041
KEGG: son:SO2611 type IV pilus biogenesis protein pilZ.
  
    0.748
Sama_1898
KEGG: son:SO2151 hypothetical protein.
 
     0.732
Sama_1899
KEGG: son:SO2150 transglutaminase family protein.
  
   
 0.716
Sama_2367
KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative.
  
     0.689
Sama_0932
KEGG: son:SO3524 type IV pilus biogenesis protein PilE.
  
     0.687
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.