STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0081Transcriptional regulator, histidine utilization repressor, GntR family; KEGG: son:SO0096 histidine utilization repressor. (234 aa)    
Predicted Functional Partners:
hutI
KEGG: son:SO0095 imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
 
  
 0.895
Sama_0070
KEGG: mlo:mlr8324 hypothetical protein.
 
  
 0.768
Sama_2711
KEGG: yps:YPTB1990 hypothetical protein.
  
    0.601
Sama_1544
KEGG: sdn:Sden_1898 ABC transporter related.
  
  
 0.569
Sama_1133
KEGG: son:SO1623 PTS system, glucose-specific IIBC component.
  
  
 0.567
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.559
Sama_0946
KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
 
  
 0.533
Sama_1631
KEGG: sru:SRU_0722 histidine ammonia-lyase.
 
  
 0.519
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.501
Sama_0374
Transcriptional regulator, GntR family; KEGG: sdn:Sden_3384 regulatory protein GntR, HTH.
  
  
 0.482
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.