STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0170Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (520 aa)    
Predicted Functional Partners:
Sama_0171
KEGG: son:SO0168 general secretion pathway protein F.
 
 
 0.993
Sama_0172
KEGG: son:SO0169 general secretion pathway protein G.
 
 
 0.969
Sama_0177
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.967
Sama_0169
KEGG: sdn:Sden_0121 type II and III secretion system protein.
  
 0.939
Sama_0368
KEGG: son:SO0415 type IV pilus biogenesis protein PilC.
 
 
 0.919
Sama_0458
KEGG: son:SO4108 MSHA biogenesis protein MshG.
 
 
 0.919
Sama_0174
KEGG: son:SO0171 general secretion pathway protein I.
 
 
 0.900
Sama_0173
KEGG: son:SO0170 general secretion pathway protein H.
 
 
 0.890
Sama_0176
KEGG: son:SO0173 general secretion pathway protein K.
 
  
 0.854
Sama_0367
Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.853
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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