STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0179KEGG: son:SO0176 general secretion pathway protein N. (251 aa)    
Predicted Functional Partners:
Sama_0177
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.943
Sama_0168
KEGG: son:SO0165 general secretion pathway protein C.
 
   
 0.925
Sama_0178
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.923
Sama_0175
KEGG: son:SO0172 general secretion pathway protein J.
 
   
 0.895
Sama_0173
KEGG: son:SO0170 general secretion pathway protein H.
 
   
 0.871
Sama_0176
KEGG: son:SO0173 general secretion pathway protein K.
 
   
 0.846
Sama_0174
KEGG: son:SO0171 general secretion pathway protein I.
 
   
 0.832
Sama_0169
KEGG: sdn:Sden_0121 type II and III secretion system protein.
 
   
 0.786
Sama_1915
KEGG: son:SO2872 hypothetical protein.
  
     0.758
Sama_1329
KEGG: sdn:Sden_1673 hypothetical protein.
  
     0.756
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.