STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0302Beta-mannosidase; KEGG: pat:Patl_0128 glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family. (863 aa)    
Predicted Functional Partners:
Sama_0304
KEGG: pat:Patl_0130 putative alpha-1,2-mannosidase.
 
     0.906
Sama_0300
KEGG: pat:Patl_0126 glycoside hydrolase, family 85.
 
     0.903
cutC
CutC; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
   
 0.879
Sama_0303
KEGG: pat:Patl_0129 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.825
Sama_0299
Asparaginase; KEGG: pat:Patl_0125 twin-arginine translocation pathway signal.
     
 0.785
Sama_0297
KEGG: bth:BT3862 endo-alpha-mannosidase.
 
     0.770
Sama_0298
KEGG: pat:Patl_0124 ATPase, BadF/BadG/BcrA/BcrD type.
       0.768
Sama_0289
KEGG: pat:Patl_0117 putative alpha-1,2-mannosidase.
 
     0.647
Sama_0288
KEGG: pat:Patl_0116 putative alpha-1,2-mannosidase.
 
     0.629
Sama_0296
KEGG: pat:Patl_0123 coagulation factor 5/8 type-like.
 
     0.573
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.