STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0303KEGG: pat:Patl_0129 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (596 aa)    
Predicted Functional Partners:
Sama_0304
KEGG: pat:Patl_0130 putative alpha-1,2-mannosidase.
 
     0.904
Sama_2676
Delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.888
Sama_0300
KEGG: pat:Patl_0126 glycoside hydrolase, family 85.
 
    0.847
Sama_0302
Beta-mannosidase; KEGG: pat:Patl_0128 glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family.
 
     0.825
cutC
CutC; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
     0.812
Sama_0299
Asparaginase; KEGG: pat:Patl_0125 twin-arginine translocation pathway signal.
 
     0.810
Sama_0298
KEGG: pat:Patl_0124 ATPase, BadF/BadG/BcrA/BcrD type.
       0.779
Sama_0297
KEGG: bth:BT3862 endo-alpha-mannosidase.
       0.731
Sama_0293
KEGG: pat:Patl_0120 putative alpha-1,2-mannosidase.
 
     0.691
Sama_0296
KEGG: pat:Patl_0123 coagulation factor 5/8 type-like.
 
     0.691
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.