STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0373Signaling modulator of AmpD, AmpE; KEGG: son:SO0422 AmpE protein. (286 aa)    
Predicted Functional Partners:
Sama_1603
KEGG: son:SO1854 hypothetical protein.
  
     0.690
bamC
Lipoprotein-34 NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.680
Sama_0372
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; KEGG: sdn:Sden_3386 N-acetylmuramoyl-L-alanine amidase, family 2.
  
  
 0.676
Sama_1329
KEGG: sdn:Sden_1673 hypothetical protein.
  
     0.653
Sama_1128
KEGG: son:SO1617 hypothetical protein.
  
     0.650
Sama_1720
KEGG: son:SO2423 hypothetical protein.
  
     0.643
Sama_1721
KEGG: son:SO2422 hypothetical protein.
  
     0.633
Sama_1246
KEGG: son:SO1816 hypothetical protein; Belongs to the UPF0319 family.
  
     0.630
Sama_1126
KEGG: son:SO1614 acetyltransferase, GNAT family.
  
     0.628
zapC
Conserved hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.611
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.