STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0413KEGG: son:SO4131 hypothetical protein. (250 aa)    
Predicted Functional Partners:
Sama_2958
KEGG: son:SO3699.1 hypothetical protein.
  
     0.670
Sama_1603
KEGG: son:SO1854 hypothetical protein.
  
     0.639
Sama_1209
KEGG: son:SO1779 decaheme cytochrome c.
  
     0.622
Sama_1210
KEGG: son:SO1779 decaheme cytochrome c.
  
     0.615
Sama_2228
KEGG: son:SO1659 decaheme cytochrome c.
  
     0.606
Sama_1246
KEGG: son:SO1816 hypothetical protein; Belongs to the UPF0319 family.
  
     0.601
Sama_1211
KEGG: son:SO1780 decaheme cytochrome c MtrF.
  
     0.597
Sama_2832
KEGG: son:SO3656 hypothetical protein.
  
     0.556
Sama_1212
KEGG: son:SO1781 outer membrane protein, putative.
  
   
 0.530
Sama_0578
KEGG: son:SO0835 hypothetical protein.
  
     0.524
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.