STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0650KEGG: son:SO0761 nitrogen regulatory protein P-II 1; Belongs to the P(II) protein family. (112 aa)    
Predicted Functional Partners:
Sama_0651
KEGG: sdn:Sden_2904 Rh-like protein/ammonium transporter.
 
 0.998
Sama_3426
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: son:SO4471 nitrogen regulation protein.
  
 
 0.847
Sama_2173
KEGG: son:SO3094 TPR domain protein.
    
 
 0.790
argA
N-acetylglutamate synthase; KEGG: son:SO4245 amino-acid acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
   
 
 0.786
argB
N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 
 0.780
glnD
(Protein-PII) uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.
 
 
 
 0.730
Sama_2746
KEGG: son:SO0943 sensory box protein, putative.
  
 
 0.635
Sama_0857
KEGG: son:SO1325 glutamate synthase (NADPH) large chain.
  
  
 0.630
Sama_0692
KEGG: son:SO3758 hypothetical protein.
   
 
 0.595
Sama_3416
KEGG: son:SO4410 glutamine synthetase, type I.
 
  
 0.562
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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