STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0707KEGG: bxe:Bxe_B2920 putative type II and III secretion system outermembrane protein, secretin; Belongs to the bacterial secretin family. (423 aa)    
Predicted Functional Partners:
Sama_0708
KEGG: bxe:Bxe_B2921 type II/IV secretion system protein E.
  
 0.989
Sama_0706
KEGG: bxe:Bxe_B2919 putative Flp pilus assembly CpaB.
 
  
 0.976
Sama_0709
KEGG: bxe:Bxe_B2922 putative type II secretion system protein F.
 
  
 0.972
Sama_0710
KEGG: bxe:Bxe_B2923 putative type II secretion system protein F.
 
  
 0.970
Sama_0702
Hypothetical protein; KEGG: ilo:IL0909 uncharacterized secreted protein.
 
  
 0.898
Sama_0711
Hypothetical protein; KEGG: bba:Bd0471 putative secreted protein.
 
     0.898
Sama_0713
KEGG: bxe:Bxe_B2925 hypothetical protein.
  
  
 0.852
Sama_0712
KEGG: mac:MA1970 hypothetical protein.
 
     0.829
Sama_0701
KEGG: bxe:Bxe_B2914 hypothetical protein.
 
     0.818
Sama_0700
Flp/Fap pilin-like protein; KEGG: ilo:IL0910 Flp/Fap pilin homolog.
 
     0.770
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.