Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sama_0783 | Sama_0784 | KEGG: sdn:Sden_0809 GGDEF domain protein. | KEGG: sdn:Sden_0807 hypothetical protein. | 0.773 |
Sama_0783 | Sama_0785 | KEGG: sdn:Sden_0809 GGDEF domain protein. | KEGG: sdn:Sden_0806 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase. | 0.824 |
Sama_0783 | Sama_0786 | KEGG: sdn:Sden_0809 GGDEF domain protein. | Acetyltransferase; KEGG: sdn:Sden_0805 GCN5-related N-acetyltransferase. | 0.572 |
Sama_0783 | Sama_0787 | KEGG: sdn:Sden_0809 GGDEF domain protein. | KEGG: sdn:Sden_0804 peptidase A1, pepsin. | 0.572 |
Sama_0783 | Sama_0788 | KEGG: sdn:Sden_0809 GGDEF domain protein. | KEGG: hch:HCH_03990 predicted transcriptional regulator. | 0.414 |
Sama_0784 | Sama_0783 | KEGG: sdn:Sden_0807 hypothetical protein. | KEGG: sdn:Sden_0809 GGDEF domain protein. | 0.773 |
Sama_0784 | Sama_0785 | KEGG: sdn:Sden_0807 hypothetical protein. | KEGG: sdn:Sden_0806 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase. | 0.768 |
Sama_0784 | Sama_0786 | KEGG: sdn:Sden_0807 hypothetical protein. | Acetyltransferase; KEGG: sdn:Sden_0805 GCN5-related N-acetyltransferase. | 0.572 |
Sama_0784 | Sama_0787 | KEGG: sdn:Sden_0807 hypothetical protein. | KEGG: sdn:Sden_0804 peptidase A1, pepsin. | 0.572 |
Sama_0784 | Sama_0788 | KEGG: sdn:Sden_0807 hypothetical protein. | KEGG: hch:HCH_03990 predicted transcriptional regulator. | 0.414 |
Sama_0785 | Sama_0783 | KEGG: sdn:Sden_0806 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase. | KEGG: sdn:Sden_0809 GGDEF domain protein. | 0.824 |
Sama_0785 | Sama_0784 | KEGG: sdn:Sden_0806 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase. | KEGG: sdn:Sden_0807 hypothetical protein. | 0.768 |
Sama_0785 | Sama_0786 | KEGG: sdn:Sden_0806 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase. | Acetyltransferase; KEGG: sdn:Sden_0805 GCN5-related N-acetyltransferase. | 0.583 |
Sama_0785 | Sama_0787 | KEGG: sdn:Sden_0806 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase. | KEGG: sdn:Sden_0804 peptidase A1, pepsin. | 0.584 |
Sama_0785 | Sama_0788 | KEGG: sdn:Sden_0806 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase. | KEGG: hch:HCH_03990 predicted transcriptional regulator. | 0.417 |
Sama_0786 | Sama_0783 | Acetyltransferase; KEGG: sdn:Sden_0805 GCN5-related N-acetyltransferase. | KEGG: sdn:Sden_0809 GGDEF domain protein. | 0.572 |
Sama_0786 | Sama_0784 | Acetyltransferase; KEGG: sdn:Sden_0805 GCN5-related N-acetyltransferase. | KEGG: sdn:Sden_0807 hypothetical protein. | 0.572 |
Sama_0786 | Sama_0785 | Acetyltransferase; KEGG: sdn:Sden_0805 GCN5-related N-acetyltransferase. | KEGG: sdn:Sden_0806 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase. | 0.583 |
Sama_0786 | Sama_0787 | Acetyltransferase; KEGG: sdn:Sden_0805 GCN5-related N-acetyltransferase. | KEGG: sdn:Sden_0804 peptidase A1, pepsin. | 0.777 |
Sama_0786 | Sama_0788 | Acetyltransferase; KEGG: sdn:Sden_0805 GCN5-related N-acetyltransferase. | KEGG: hch:HCH_03990 predicted transcriptional regulator. | 0.550 |
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