Sama_0825 protein (Shewanella amazonensis) - STRING interaction network

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Score

Sama_0825

KEGG: son:SO1287 hypothetical protein. (147 aa)

Predicted Functional Partners:

rpsU

0.970

dnaG

0.608

tsaD

0.532

rpsO

0.518

rpmE

0.474

rpoD

0.416

Your Current Organism:

Shewanella amazonensis

NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Sama_0825	dnaG	Sama_0825	Sama_0824	KEGG: son:SO1287 hypothetical protein.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.608
Sama_0825	rpmE	Sama_0825	Sama_0447	KEGG: son:SO1287 hypothetical protein.	LSU ribosomal protein L31P; Binds the 23S rRNA.	0.474
Sama_0825	rpoD	Sama_0825	Sama_0823	KEGG: son:SO1287 hypothetical protein.	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.416
Sama_0825	rpsO	Sama_0825	Sama_0964	KEGG: son:SO1287 hypothetical protein.	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.518
Sama_0825	rpsU	Sama_0825	Sama_0826	KEGG: son:SO1287 hypothetical protein.	KEGG: sdn:Sden_2831 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.970
Sama_0825	tsaD	Sama_0825	Sama_0827	KEGG: son:SO1287 hypothetical protein.	O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.532
dnaG	Sama_0825	Sama_0824	Sama_0825	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	KEGG: son:SO1287 hypothetical protein.	0.608
dnaG	rpoD	Sama_0824	Sama_0823	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.873
dnaG	rpsU	Sama_0824	Sama_0826	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	KEGG: sdn:Sden_2831 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.750
dnaG	tsaD	Sama_0824	Sama_0827	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.699
rpmE	Sama_0825	Sama_0447	Sama_0825	LSU ribosomal protein L31P; Binds the 23S rRNA.	KEGG: son:SO1287 hypothetical protein.	0.474
rpmE	rpsO	Sama_0447	Sama_0964	LSU ribosomal protein L31P; Binds the 23S rRNA.	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.992
rpmE	rpsU	Sama_0447	Sama_0826	LSU ribosomal protein L31P; Binds the 23S rRNA.	KEGG: sdn:Sden_2831 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.962
rpoD	Sama_0825	Sama_0823	Sama_0825	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	KEGG: son:SO1287 hypothetical protein.	0.416
rpoD	dnaG	Sama_0823	Sama_0824	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.873
rpoD	rpsU	Sama_0823	Sama_0826	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	KEGG: sdn:Sden_2831 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.472
rpoD	tsaD	Sama_0823	Sama_0827	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.445
rpsO	Sama_0825	Sama_0964	Sama_0825	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	KEGG: son:SO1287 hypothetical protein.	0.518
rpsO	rpmE	Sama_0964	Sama_0447	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	LSU ribosomal protein L31P; Binds the 23S rRNA.	0.992
rpsO	rpsU	Sama_0964	Sama_0826	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	KEGG: sdn:Sden_2831 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.985