STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0990KEGG: son:SO1237 acetoin utilization protein AcuB, putative. (140 aa)    
Predicted Functional Partners:
Sama_0991
KEGG: son:SO1238 acyltransferase family protein.
       0.658
Sama_0992
KEGG: son:SO1239 hypothetical protein.
       0.658
Sama_0989
KEGG: son:SO1234 warning TorE protein.
       0.513
Sama_2925
KEGG: son:SO0805 CBS domain protein.
  
   
 0.503
Sama_1618
KEGG: son:SO2228 CBS domain protein.
 
     0.498
Sama_0988
KEGG: son:SO1233 tetraheme cytochrome c; Belongs to the TorC/TorY family.
       0.486
torD
TorA specific chaperone; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
       0.471
Sama_0987
KEGG: son:SO1232 trimethylamine-N-oxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.471
Sama_0993
Periplasmic ligand-binding sensor domain-like protein; KEGG: cps:CPS_2607 GGDEF domain protein protein.
       0.462
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.