STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1089KEGG: son:SO1578 transcriptional regulator, TetR family. (190 aa)    
Predicted Functional Partners:
Sama_1088
KEGG: son:SO1577 glutathione S-transferase family protein.
       0.565
Sama_1087
KEGG: son:SO1576 glutathione S-transferase family protein; Belongs to the GST superfamily.
       0.550
Sama_2389
KEGG: son:SO2455 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
 
   0.423
Sama_3129
KEGG: son:SO0577 sensory box histidine kinase/response regulator.
    
 
 0.405
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.