STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1188KEGG: son:SO1751 hypothetical protein. (1186 aa)    
Predicted Functional Partners:
Sama_1187
KEGG: son:SO1750 ABC transporter, ATP-binding protein.
 
   0.952
Sama_3515
Conserved hypothetical protein; KEGG: son:SO3697 steroid delta-isomerase domain protein.
  
     0.548
Sama_2378
KEGG: son:SO3336 hypothetical protein.
  
     0.524
Sama_0737
KEGG: sdn:Sden_0711 putative esterase.
  
     0.515
Sama_1186
KEGG: son:SO4017 transglycosylase, Slt family.
 
     0.484
Sama_0075
KEGG: sdn:Sden_0079 hypothetical protein.
  
     0.441
Sama_0161
KEGG: son:SO0152 hypothetical carboxypeptidase.
  
   
 0.441
Sama_1189
KEGG: son:SO1755 phosphoglucomutase/phosphomannomutase family protein.
       0.433
Sama_1512
KEGG: son:SO2900 hypothetical protein.
 
     0.425
Sama_2562
KEGG: sdn:Sden_0924 protein of unknown function DUF819.
  
     0.421
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.