STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1213KEGG: son:SO1782 decaheme cytochrome c MtrD. (318 aa)    
Predicted Functional Partners:
Sama_1211
KEGG: son:SO1780 decaheme cytochrome c MtrF.
 
 
 0.974
Sama_1212
KEGG: son:SO1781 outer membrane protein, putative.
 
 
 0.967
Sama_1206
KEGG: son:SO1776 outer membrane protein precursor MtrB.
 
 
 0.945
Sama_1210
KEGG: son:SO1779 decaheme cytochrome c.
 
 
 0.924
Sama_1208
KEGG: son:SO1778 decaheme cytochrome c.
   
 
 0.829
Sama_2228
KEGG: son:SO1659 decaheme cytochrome c.
 
 
 0.748
Sama_1209
KEGG: son:SO1779 decaheme cytochrome c.
 
     0.731
Sama_2902
Hypothetical protein; KEGG: hdu:HD0347 nitrate reductase, cytochrome-C type protein.
 
 
0.614
Sama_3129
KEGG: son:SO0577 sensory box histidine kinase/response regulator.
  
 
 
 0.605
nrfA
Respiratory nitrite reductase (cytochrome; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
 
 0.583
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.