STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1237KEGG: son:SO1807 phage shock protein A. (227 aa)    
Predicted Functional Partners:
Sama_1238
KEGG: son:SO1808 phage shock protein B.
 
 
 0.999
Sama_1239
KEGG: son:SO1809 phage shock protein C.
 
 
 0.999
Sama_3129
KEGG: son:SO0577 sensory box histidine kinase/response regulator.
    
 
 0.807
Sama_0747
Signal transduction histidine kinase-like protein; KEGG: xcb:XC_1756 two-component system sensor protein.
    
 
 0.805
Sama_0067
Hpt sensor hybrid histidine kinase; KEGG: hch:HCH_00809 signal transduction histidine kinase.
    
 
 0.798
Sama_2952
KEGG: son:SO0859 sensory box histidine kinase/response regulator.
    
 
 0.798
Sama_2667
KEGG: son:SO3764 hypothetical protein.
  
  
 0.743
Sama_3595
KEGG: dde:Dde_1943 histidine kinase.
  
 
 
 0.740
Sama_1236
KEGG: son:SO1806 psp operon transcriptional activator.
 
   
 0.737
Sama_3053
KEGG: son:SO3909 hypothetical protein.
  
 
 0.705
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.