STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1305KEGG: sdn:Sden_2386 protein of unknown function DUF692; Belongs to the UPF0276 family. (278 aa)    
Predicted Functional Partners:
Sama_1306
KEGG: sdn:Sden_2385 hypothetical protein.
 
  
 0.990
Sama_1304
KEGG: son:SO2007 hypothetical protein.
 
  
 0.931
Sama_1456
KEGG: son:SO2710 hypothetical protein.
 
  
 0.811
Sama_0708
KEGG: bxe:Bxe_B2921 type II/IV secretion system protein E.
   
    0.599
Sama_2217
KEGG: sdn:Sden_3045 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
   
    0.565
Sama_3258
KEGG: she:Shewmr4_0384 putative outer membrane adhesin like protein.
   
    0.565
Sama_1307
KEGG: sdn:Sden_2384 hypothetical protein.
       0.519
Sama_2954
KEGG: ppr:PBPRA0130 hypothetical protein.
   
    0.505
Sama_2907
KEGG: sde:Sde_3020 hypothetical protein.
   
    0.495
Sama_1389
KEGG: son:SO3319 hypothetical protein.
  
  
 0.489
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.