STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1308KEGG: son:SO2011 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Sama_1798
KEGG: son:SO2357 hypothetical protein.
   
    0.780
Sama_1307
KEGG: sdn:Sden_2384 hypothetical protein.
       0.539
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.529
Sama_3326
KEGG: vpa:VPA0976 hypothetical protein.
 
     0.476
Sama_1305
KEGG: sdn:Sden_2386 protein of unknown function DUF692; Belongs to the UPF0276 family.
  
    0.469
Sama_1310
KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits.
       0.401
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.