STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1403KEGG: sdn:Sden_2027 glucose/galactose transporter. (415 aa)    
Predicted Functional Partners:
Sama_1404
Beta-glucosidase; KEGG: sdn:Sden_2605 beta-glucosidase.
 
     0.813
Sama_1405
N-acetylglucosamine kinase; KEGG: sdn:Sden_2603 transcriptional regulator/sugar kinase.
  
  
 0.593
Sama_1531
Dihydrodipicolinate synthetase family protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
  
 0.484
Sama_1402
Beta-glucosidase; KEGG: sdn:Sden_2607 beta-glucosidase.
       0.482
Sama_1401
KEGG: sdn:Sden_2608 sugar (glycoside-Pentoside-Hexuronide) transporter.
  
    0.471
Sama_1400
KEGG: sdn:Sden_2609 periplasmic binding protein/LacI transcriptional regulator.
       0.419
Sama_1399
KEGG: sdn:Sden_2610 TonB-dependent receptor.
 
  
 0.414
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.