STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1481KEGG: son:SO2064 hypothetical protein. (1100 aa)    
Predicted Functional Partners:
Sama_1480
KEGG: son:SO2063 hypothetical protein.
 
   
 0.951
Sama_1479
KEGG: son:SO2062 hypothetical protein.
 
   
 0.948
Sama_1616
KEGG: son:SO2114 hypothetical protein.
  
 
 0.837
Sama_3331
KEGG: son:SO0320 hypothetical protein.
  
     0.521
Sama_1482
Aminotransferase; KEGG: pae:PA5523 glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.495
Sama_3390
KEGG: son:SO4379 hypothetical protein.
  
     0.474
Sama_0111
KEGG: sdn:Sden_0209 hypothetical protein.
 
    0.449
Sama_2151
KEGG: son:SO3069 putative membrane protein.
  
     0.447
Sama_0109
KEGG: son:SO4681 glycosyl transferase, group 1 family protein.
  
     0.443
Sama_2906
KEGG: son:SO1697 hypothetical protein.
  
     0.431
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.