STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1544KEGG: sdn:Sden_1898 ABC transporter related. (225 aa)    
Predicted Functional Partners:
Sama_1543
KEGG: cps:CPS_3309 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein.
 
 
 0.995
Sama_1545
KEGG: sdn:Sden_1897 binding-protein-dependent transport systems inner membrane component.
 
 
 0.994
Sama_2400
KEGG: son:SO1417 sensor histidine kinase.
  
  
 0.633
Sama_3182
Histidine kinase; KEGG: son:SO4155 sensor histidine kinase.
  
  
 0.633
Sama_0081
Transcriptional regulator, histidine utilization repressor, GntR family; KEGG: son:SO0096 histidine utilization repressor.
  
  
 0.569
Sama_1409
KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative.
   
  
 0.534
Sama_1541
KEGG: son:SO1945 sensor protein PhoQ.
       0.510
Sama_1542
Two component transcriptional regulator, winged helix family; KEGG: son:SO1946 transcriptional regulatory protein PhoP.
       0.510
selU
tRNA 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
 
     0.491
ccmA
Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
  
     0.490
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.