STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1548KEGG: sdn:Sden_1365 ATP-binding region, ATPase-like protein. (509 aa)    
Predicted Functional Partners:
Sama_3129
KEGG: son:SO0577 sensory box histidine kinase/response regulator.
 
 
 0.897
Sama_1549
Response regulator receiver protein; KEGG: sdn:Sden_1366 sigma-54 factor, interaction region.
 
 
   0.884
Sama_0747
Signal transduction histidine kinase-like protein; KEGG: xcb:XC_1756 two-component system sensor protein.
 
 
 0.865
Sama_0908
KEGG: mag:amb3313 signal transduction histidine kinase.
 
 
 
 0.653
Sama_2952
KEGG: son:SO0859 sensory box histidine kinase/response regulator.
 
 
 
 0.600
Sama_1031
KEGG: son:SO3457 sensor histidine kinase/response regulator.
 
 
 
0.599
Sama_0067
Hpt sensor hybrid histidine kinase; KEGG: hch:HCH_00809 signal transduction histidine kinase.
 
 
 
0.564
Sama_3110
KEGG: pat:Patl_2249 multi-sensor hybrid histidine kinase.
 
 
 
 0.494
Sama_1409
KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative.
     
 0.484
Sama_3243
Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: ppr:PBPRA2771 phosphoglycerate transport system transcription regulator.
 
 
   0.436
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.