STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1596KEGG: son:SO2518 hypothetical protein. (298 aa)    
Predicted Functional Partners:
Sama_1336
KEGG: shm:Shewmr7_2493 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.692
Sama_1595
KEGG: sdn:Sden_0276 hypothetical protein.
       0.682
Sama_0592
KEGG: son:SO4008 hypothetical protein.
 
   
 0.663
Sama_1998
KEGG: son:SO2201 hypothetical protein.
  
     0.663
Sama_2326
KEGG: son:SO3258 hypothetical protein.
  
     0.657
Sama_3152
KEGG: sdn:Sden_0671 hypothetical protein.
  
     0.656
Sama_0594
KEGG: son:SO4006 hypothetical protein.
 
     0.649
Sama_0894
KEGG: son:SO1362 prephenate dehydrogenase / chorismate mutase.
 
  
 0.627
Sama_3038
KEGG: vfi:VF1559 hypothetical protein.
  
     0.627
Sama_2108
KEGG: son:SO2798 hypothetical protein.
  
     0.623
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.